- Basic information
- CohesinDB ID: CDBP00413765
- Locus: chr21-16474094-16474486
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Data sourse: GSE138405, GSE206145-NatGen2015, GSE206145
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Cell type: RPE, Hela-Kyoto, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
40% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 67%,
"7_Enh": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PPARG, MYCN, ZNF792, TWIST1, ERG, SMARCC1, RELA, MYC, LHX2, ARNT, HIF1A, SOX11, OTX2, CDK8, MED1, NR3C1, CEBPB, NR2F2, TRIM28, JUN, BCL11A, AR, FLI1, BRD4, PDX1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops