- Basic information
- CohesinDB ID: CDBP00413766
- Locus: chr21-16475763-16476516
-
Data sourse: GSE206145, GSE206145-NatGen2015, GSE165895
-
Cell type: RPE, Fibroblast, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,Rad21,SA2,SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
40% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 68%,
"7_Enh": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RUNX1, FOXO1, TRP47, PGR, PPARG, FOXA2, ZBTB48, WT1, MAFF, FOXA1, DUX4, ZNF823, HOXB13, ERG, CREBBP, RUNX2, GATA4, RAD21, TOP1, PBX4, ARNT, HIF1A, GRHL3, OTX2, GATA3, GABPA, TAL1, RCOR1, NR3C1, TEAD1, ESR1, TRPS1, MAFK, BAF155, AR, GATA2, ASH2L, BRD4, CTBP2, FOXP1, E2F1, PDX1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops