- Basic information
- CohesinDB ID: CDBP00413769
- Locus: chr21-16504857-16505627
-
Data sourse: ENCSR000BLY, GSE105028, GSE206145-NatGen2015, ENCSR000ECE, ENCSR198ZYJ, ENCSR000EHX
-
Cell type: H1-hESC, Fibroblast, Neurons-H1, SK-N-SH, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: Mau2,Rad21,SA2
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
40% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 85%,
"7_Enh": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: TLE3, NR3C1, SS18, RAD21, ZNF534, GTF2B, CTCF, OTX2, FOXA1, PRDM9, ELF3, HOXB13, PRDM10, ERG
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops