- Basic information
- CohesinDB ID: CDBP00413779
- Locus: chr21-16541151-16541840
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Data sourse: GSE138405, GSE126990, ENCSR000EDE
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Cell type: HeLa-S3, Hela-Kyoto
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
40% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 69%,
"5_TxWk": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXA2, POU5F1, NKX2-2, SOX2, FOXA1, ERG, RELA, GATA4, RAD21, PRDM1, ARNT, SMC3, NFYA, PAX5, NKX3-1, FOS, KLF4, NR3C1, ELF1, MYOD1, JUN, BAF155, AR, GATA2, BRD4, JUND, ZNF490, NFYB, PDX1, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops