- Basic information
- CohesinDB ID: CDBP00413802
- Locus: chr21-16607375-16609815
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, ENCSR230ZWH, GSE72082, ENCSR501LQA, GSE126634, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE105028, GSE103477, GSE25021, ENCSR330ELC, GSE108869, ENCSR000BUC, ENCSR917QNE, ENCSR000EFJ, ENCSR000BTU, GSE115602, GSE122299, GSE138405, GSE76893, GSE101921, ENCSR806UKK, GSE135093, GSE152721, GSE206145-NatGen2015, GSE112028, GSE130135, ENCSR199XBQ, ENCSR703TNG, GSE106870, GSE116344, GSE138105, GSE145327, GSE94872, ENCSR895JMI, ENCSR000EEG, ENCSR193NSH, ENCSR768DOX, ENCSR000BLS, ENCSR000EHW, GSE85526, ENCSR000ECE, ENCSR247LSH, ENCSR000BMY, ENCSR000EHX, ENCSR620NWG, ENCSR748MVX, ENCSR767DFK, ENCSR807WAC, ENCSR495WGO, ENCSR981FDC, ENCSR984DZW, GSE97394, ENCSR217ELF, ENCSR000BTQ, GSE105004, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, GSE131956, ENCSR000HPG, ENCSR676MJK, ENCSR335RKQ, ENCSR054FKH, ENCSR000EDE, GSE68388, GSE206145, GSE126990, GSE50893, ENCSR000ECS, ENCSR481YWD
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Cell type: RH4, GM2610, SLK, CVB-hiPSC, CVI-hiPSC, Liver, HuCC-T1, H9-hESC, RPE, GM2630, HMEC, Fibroblast, HEKn, Ishikawa, GM12890, HeLa-S3, IMR-90, H1-hESC, GM12878, GM2588, GBM39, SK-N-SH, HeLa-Tet-On, THP-1, HUES64, MCF-7, Hela-Kyoto, MCF-10A, HEK293T, Hep-G2, A-549, HUVEC, HCAEC, HeLa, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 41% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.600
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
40% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 67%,
"5_TxWk": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, HIF1A, NOTCH3, FOXA1, SPI1, ZNF19
- Target gene symbol (double-evidenced CRMs): USP25
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 43
- Related genes and loops
- Related gene:
ENSG00000155313,
- Related loop:
chr21:15875000-15900000~~chr21:16600000-16625000,
chr21:16075000-16100000~~chr21:16600000-16625000,
chr21:16081162-16083633~~chr21:16607552-16609634,
chr21:16125000-16150000~~chr21:16600000-16625000,
chr21:16175000-16200000~~chr21:16600000-16625000,
chr21:16200000-16225000~~chr21:16600000-16625000,
chr21:16325000-16350000~~chr21:16600000-16625000,
chr21:16400000-16425000~~chr21:16600000-16625000,
chr21:16450000-16475000~~chr21:16600000-16625000,
chr21:16453706-16455321~~chr21:16607527-16609497,
chr21:16453738-16455573~~chr21:16607762-16609529,
chr21:16453760-16455329~~chr21:16607672-16609536,
chr21:16453967-16455273~~chr21:16607552-16609634,
chr21:16607527-16609497~~chr21:17044740-17046062,