- Basic information
- CohesinDB ID: CDBP00413804
- Locus: chr21-16619888-16620218
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Data sourse: GSE206145-NatGen2015, GSE86191
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Cell type: Fibroblast, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
40% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 77%,
"5_TxWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRP47, BCL6, CHD8, FOXA2, ZFX, ZBTB48, CREBBP, OGG1, ONECUT1, EZH1, ARNT, HIF1A, NKX2-1, ATF2, MAX, ZNF143, CSNK2A1, NCOA3, EZH2, BCL6B, AR, EGLN2, ATF7, JUND
- Target gene symbol (double-evidenced CRMs): USP25
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000155313,
- Related loop:
chr21:15875000-15900000~~chr21:16600000-16625000,
chr21:16075000-16100000~~chr21:16600000-16625000,
chr21:16125000-16150000~~chr21:16600000-16625000,
chr21:16175000-16200000~~chr21:16600000-16625000,
chr21:16200000-16225000~~chr21:16600000-16625000,
chr21:16325000-16350000~~chr21:16600000-16625000,
chr21:16325000-16350000~~chr21:16625000-16650000,
chr21:16400000-16425000~~chr21:16600000-16625000,
chr21:16450000-16475000~~chr21:16600000-16625000,
chr21:16625000-16650000~~chr21:16925000-16950000,
chr21:16625000-16650000~~chr21:17125000-17150000,
chr21:16625000-16650000~~chr21:17250000-17275000,