- Basic information
- CohesinDB ID: CDBP00413808
- Locus: chr21-16633661-16635137
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Data sourse: ENCSR000BLD, ENCSR230ZWH, GSE126634, ENCSR404BPV, GSE152721, GSE206145-NatGen2015, ENCSR917QNE
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Cell type: H1-hESC, Fibroblast, Neurons-H1, Liver, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SMC3,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
40% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 61%,
"7_Enh": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NANOG, PPARG, CEBPA, POU5F1, EBF1, ZNF660, SOX2, ZNF534, RBBP5, ZSCAN16, GTF2B, WT1, ZBTB17, FOXA1, ZNF823, SMARCC1, PRDM10, YY1, JUNB, NFIC, MYC, SMARCA4, CHD7, PRDM1, RAD21, HIF1A, ZBTB44, GRHL3, NKX2-1, ARNT, GATA1, MED1, ZNF467, CSNK2A1, CEBPB, CEBPD, TRIM28, SMAD1, ZBTB6, EBF3, TCF12, BCL11A, SP1, AR, FOXA2, NKX2-5, ZBTB7A, PRDM4, SIX2, POU2F3, ASH2L, CTBP2, PRDM6, SMC3, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops