- Basic information
- CohesinDB ID: CDBP00413809
- Locus: chr21-16640229-16641185
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Data sourse: GSE206145-NatGen2015, ENCSR230ZWH, ENCSR917QNE
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Cell type: Liver, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
40% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 93%,
"5_TxWk": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXA2, STAT1, FOXA1, ZBTB33, HNF4G, YY1, OGG1, ATF3, ONECUT1, TOP1, RAD21, RXRA, MAX, SP1, SPI1, MIXL1, HNF4A, AR, REST, ZNF644, EGR1, JUND, FOXP1, FOXA3
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 9
- Related genes and loops