- Basic information
- CohesinDB ID: CDBP00413820
- Locus: chr21-16713420-16714165
-
Data sourse: GSE206145-NatGen2015
-
Cell type: Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2,SA1,SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES,Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
40% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 90%,
"7_Enh": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RUNX1, PGR, NKX2-2, EBF1, ZNF660, TOP2A, ZSCAN16, FOXA1, HOXB13, ERG, RELA, SMARCA4, ARNT, PRDM9, TAL1, GATA1, MED1, VDR, NR3C1, CREB1, EBF3, JUN, CTCF, BCL11A, AR, GATA2, FLI1, E2F1, MRTFB
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops