- Basic information
- CohesinDB ID: CDBP00413823
- Locus: chr21-16740976-16741894
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Data sourse: ENCSR198ZYJ, ENCSR404BPV
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Cell type: Neurons-H1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
40% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 73%,
"7_Enh": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NCOA2, RUNX1, CHD8, PPARG, MAFG, MYCN, FOXA2, TOP2A, SOX2, CEBPA, NKX2-2, MAFF, FOXA1, ZNF205, HOXB13, TWIST1, ERG, RELA, RAD21, ISL1, GRHL3, GATA3, PAX5, NRIP1, GATA1, NKX3-1, HAND2, SFPQ, NR2F2, ZNF573, PIAS1, EBF3, MAFK, EP300, BAF155, AR, REST, GATA2, BRD4, FOXP1, SMC3, PDX1, ZNF316
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 11
- Related genes and loops