- Basic information
- CohesinDB ID: CDBP00413824
- Locus: chr21-16749746-16751249
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Data sourse: GSE126634, GSE115250
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Cell type: TC-32, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
39% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 90%,
"7_Enh": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, CREM, SOX2, DUX4, FOXA1, HIC1, HOXB13, SMARCC1, ERG, ZNF384, ASCL1, JUNB, MYC, NFIC, SMARCA4, CHD7, RUNX3, OTX2, STAT3, FOXM1, TP63, HAND2, MED1, TLE3, NR3C1, CEBPB, BCL11B, SCRT2, PIAS1, TP53, TP73, ZNF843, BAF155, AR, GATA2, ARID1A, PRDM4, BRD4, PHIP, SCRT1, EED
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 26
- Related genes and loops