- Basic information
- CohesinDB ID: CDBP00413827
- Locus: chr21-16772782-16773717
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Data sourse: ENCSR000BTU, GSE138405, GSE206145, GSE206145-NatGen2015, GSE116344
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Cell type: RPE, Hela-Kyoto, Fibroblast, RH4, Ishikawa, B-cell
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: Mau2,SA1,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 84%,
"7_Enh": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, SMARCA2, XBP1, STAT1, FOXA1, SMARCC1, ERG, RELA, RUNX2, HIF1A, ARNTL, VDR, NR3C1, CEBPB, KLF5, TEAD1, EZH2, OCA2, TCF12, SPI1, AR, FLI1, BRD4, MRTFB, TEAD4
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops