- Basic information
- CohesinDB ID: CDBP00413830
- Locus: chr21-16793882-16795801
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Data sourse: ENCSR501LQA, ENCSR000BLY, ENCSR150EFU, ENCSR000ECS, GSE108869, ENCSR000BUC, GSE165895, ENCSR000EFJ, GSE138405, GSE206145-NatGen2015, GSE138105, ENCSR199XBQ, ENCSR193NSH, GSE206145, ENCSR981FDC, ENCSR807WAC, ENCSR000EHX, ENCSR984DZW, ENCSR495WGO, ENCSR217ELF, ENCSR853VWZ, GSE131956, ENCSR000HPG, ENCSR676MJK, ENCSR000EDE, GSE68388, GSE126990, ENCSR748MVX
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Cell type: RPE, Fibroblast, Hela-Kyoto, SLK, A-549, HeLa-S3, GBM39, IMR-90, SK-N-SH, HuCC-T1, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 12% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.878
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 70%,
"7_Enh": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, SMC1A, FOXA2, MYCN, CHD2, SOX2, SIN3A, SMAD3, MAFF, FOXA1, SMARCC1, BCL3, HOXC5, ZKSCAN1, RELA, ERG, JUNB, ATF3, NFIC, CHD7, RAD21, PBX4, HIF1A, DAXX, RXRA, OTX2, GATA3, SMC3, TAL1, PBX3, MAX, FOS, ZNF143, RCOR1, MED1, VDR, NR3C1, ESRRA, CEBPB, TEAD1, NR2F2, ELF1, TP53, ESR1, GRHL2, NFKB1, MYOD1, CTCF, TCF12, JUN, EP300, SP1, MAFK, BHLHE40, AR, PAX3-FOXO1, BCL11A, REST, YAP1, GATA2, RFX5, FLI1, BRD4, JUND, E2F1, MRTFB, TEAD4, ZNF92, TFAP2C, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops