- Basic information
- CohesinDB ID: CDBP00413832
- Locus: chr21-16800530-16801006
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Data sourse: GSE101921, GSE206145-NatGen2015, GSE165895
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Cell type: Fibroblast, HCAEC, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 94%,
"9_Het": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, FOXO1, PGR, FOXA2, SMAD3, ESR2, FOXA1, HOXB13, ERG, RELA, JUNB, GRHL3, GATA3, STAT3, TAL1, FOS, CEBPB, ELF1, NR2F2, ETV1, ZNF334, JUN, ELF3, EP300, EHF, AR, GATA2, FLI1, SMC1, MRTFB, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops