- Basic information
- CohesinDB ID: CDBP00413833
- Locus: chr21-16810989-16812501
-
Data sourse: GSE206145-NatGen2015, ENCSR000EHX, ENCSR000BLY
-
Cell type: Fibroblast, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,SA1,Rad21,SA2
-
CTCF binding site: non-CTCF
CTCF motif: True
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 95%,
"9_Het": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: DUX4, FOXA1, ZNF823, HOXB13, ERG, JUNB, ZNF341, ZNF90, ISL1, RAD21, SOX11, GATA3, BATF3, RCOR1, HAND2, CEBPB, PITX3, EBF3, CTCF, EP300, BAF155, AR, BRD4, SMC3
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops