- Basic information
- CohesinDB ID: CDBP00413836
- Locus: chr21-16824767-16825146
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Data sourse: GSE206145, GSE206145-NatGen2015
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Cell type: RPE, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 92%,
"9_Het": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PAX7, MYC, TOP2A, ATF7, JUND, ATF2, ZNF334, JUN
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 8
- Related genes and loops
- Related gene:
- Related loop:
chr21:16050000-16075000~~chr21:16825000-16850000,
chr21:16175000-16200000~~chr21:16825000-16850000,
chr21:16325000-16350000~~chr21:16825000-16850000,
chr21:16375000-16400000~~chr21:16800000-16825000,
chr21:16575000-16600000~~chr21:16825000-16850000,
chr21:16800000-16825000~~chr21:17250000-17275000,
chr21:16825000-16850000~~chr21:17050000-17075000,
chr21:16825000-16850000~~chr21:17125000-17150000,
chr21:16825000-16850000~~chr21:17200000-17225000,
chr21:16825000-16850000~~chr21:17250000-17275000,
chr21:16825000-16850000~~chr21:17650000-17675000,