- Basic information
- CohesinDB ID: CDBP00413840
- Locus: chr21-16841993-16843333
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Data sourse: GSE206145-NatGen2015, ENCSR000EHX, GSE131956
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Cell type: Fibroblast, GBM39, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2,Mau2,SMC3
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 66%,
"7_Enh": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, FOXO1, ZNF283, PGR, NANOG, FOXA2, POU5F1, NKX2-2, TOP2A, CHD2, RBPJ, SOX2, NME2, LDB1, SMAD3, EZH2phosphoT487, FOXA1, HOXB13, TWIST1, NOTCH1, NEUROD1, MYC, SMARCA4, GATA4, RAD21, ISL1, ARNT, OTX2, GATA3, BATF3, MAX, GATA1, RCOR1, HAND2, CDX2, TLE3, NR3C1, CEBPB, NR2F2, SCRT2, NEUROG2, KLF9, NCOA1, PITX3, EBF3, PHOX2B, CTCF, EP300, SPI1, AR, GATA6, GATA2, RBM25, BRD4, ZNF440, TEAD4, ZNF92, BRCA1, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 11
- Related genes and loops