- Basic information
- CohesinDB ID: CDBP00413841
- Locus: chr21-16845686-16845860
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Data sourse: GSE206145, GSE93080, GSE206145-NatGen2015
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Cell type: RPE, GM12878, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 99%,
"9_Het": 1%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF384
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
- Related loop:
chr21:16050000-16075000~~chr21:16825000-16850000,
chr21:16175000-16200000~~chr21:16825000-16850000,
chr21:16325000-16350000~~chr21:16825000-16850000,
chr21:16450000-16475000~~chr21:16850000-16875000,
chr21:16575000-16600000~~chr21:16825000-16850000,
chr21:16575000-16600000~~chr21:16850000-16875000,
chr21:16825000-16850000~~chr21:17050000-17075000,
chr21:16825000-16850000~~chr21:17125000-17150000,
chr21:16825000-16850000~~chr21:17200000-17225000,
chr21:16825000-16850000~~chr21:17250000-17275000,
chr21:16825000-16850000~~chr21:17650000-17675000,
chr21:16850000-16875000~~chr21:17250000-17275000,