- Basic information
- CohesinDB ID: CDBP00413845
- Locus: chr21-16870138-16870625
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Data sourse: GSE111537, GSE206145-NatGen2015
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Cell type: Fibroblast, OCI-AML-3
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 92%,
"7_Enh": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, FOXO1, PGR, PPARG, CEBPA, MEIS1, FOXA1, MEF2C, CDK9, HOXB13, SMARCC1, ERG, RELA, JUNB, SMARCA4, RAD21, PRDM1, ARNT, TCF4, NKX2-1, STAT3, FOS, CDK8, MED1, VDR, CEBPB, JMJD1C, NR2F2, CEBPD, MYB, ETV1, MLL, BCL11A, SPI1, EP300, GATA2, TRIM24, SIX2, FLI1, BRD4, KMT2B
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops