- Basic information
- CohesinDB ID: CDBP00413854
- Locus: chr21-16920366-16920803
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Data sourse: GSE62063
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Cell type: Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, PRDM1, DUX4, FOXA1, CTCF, HOXB13, BRCA1, ERG
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
- Related loop:
chr21:16450000-16475000~~chr21:16925000-16950000,
chr21:16625000-16650000~~chr21:16925000-16950000,
chr21:16925000-16950000~~chr21:17025000-17050000,
chr21:16925000-16950000~~chr21:17125000-17150000,
chr21:16925000-16950000~~chr21:17250000-17275000,
chr21:16925000-16950000~~chr21:17300000-17325000,
chr21:16925000-16950000~~chr21:17350000-17375000,
chr21:16925000-16950000~~chr21:17375000-17400000,
chr21:16925000-16950000~~chr21:17525000-17550000,
chr21:16925000-16950000~~chr21:17550000-17575000,
chr21:16925000-16950000~~chr21:17575000-17600000,