- Basic information
- CohesinDB ID: CDBP00413858
- Locus: chr21-16969317-16970343
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Data sourse: GSE206145-GSE177045
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 95%,
"9_Het": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, NANOG, PGR, PPARG, FOXA2, BRD3, XBP1, FOXA1, ZBTB33, HOXB13, SMARCC1, HNF4G, ERG, YY1, RELA, ATF3, ONECUT1, SMARCA4, GRHL3, RXRA, TAL1, MAX, NKX3-1, MED1, TLE3, NR3C1, CREB1, PIAS1, ESR1, PHOX2B, CTCF, JUN, SP1, BAF155, HNF4A, AR, REST, ARID1A, GATA2, JUND, FOXP1, BRCA1, PDX1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 10
- Related genes and loops