- Basic information
- CohesinDB ID: CDBP00413862
- Locus: chr21-16978420-16978897
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Data sourse: ENCSR000BLD, GSE67783, GSE86191, GSE105028, GSE83726
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Cell type: H1-hESC, RH4, HCT-116, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 87%,
"7_Enh": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, MYCN, RUNX1T1, ZFX, XBP1, ZBTB48, TWIST1, PRDM10, RELA, CREBBP, MYC, SMARCA4, OSR2, ZBTB44, RAD21, ARNT, HIF1A, GRHL3, MAX, HAND2, TRIM28, NEUROG2, EZH2, MED26, EBF3, MYOD1, CTCF, MNT, AR, NOTCH3, BRD4, MAZ, ZIM3, STAG1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops