- Basic information
- CohesinDB ID: CDBP00413863
- Locus: chr21-16983165-16983814
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Data sourse: GSE62063, GSE206145-GSE177045, ENCSR230ZWH, ENCSR917QNE
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Cell type: MCF-7, Liver, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: NIPBL,Rad21,Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 99%,
"9_Het": 1%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, PGR, MEF2B, NANOG, FOXA2, NKX2-2, CBX1, MEIS1, SIN3A, MYCN, FOXA1, ZBTB33, HOXB13, ERG, YY1, RELA, ONECUT1, GATA4, RAD21, HIF1A, RXRA, GATA3, GABPA, MAX, NKX3-1, GATA1, HDAC3, TLE3, NR3C1, ESRRA, CREB1, PIAS1, ETV1, ESR1, PKNOX1, GRHL2, FUS, PHOX2B, JUN, TCF12, CTCF, SP1, BAF155, SPI1, HNF4A, AR, GATA6, BCL11A, GATA2, REST, ASH2L, JUND, FOXP1, TEAD4, PDX1, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 8
- Related genes and loops