- Basic information
- CohesinDB ID: CDBP00413866
- Locus: chr21-17002378-17004889
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Data sourse: ENCSR000BTU, GSE138405, ShirahigeLab-NatGen2015, GSE126990, GSE165895
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Cell type: Hela-Kyoto, Ishikawa, Fibroblast, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC1,SA2,Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
31% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 61%,
"7_Enh": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, PGR, SMARCA2, ZNF496, E2F7, SOX2, FOXA1, NFIC, ZNF362, CHD7, RUNX3, TP63, ZNF736, KLF5, TEAD1, ELF1, SNAI2, ESR1, TP73, JUN, TCF12, EP300, IRF4, TEAD4, NANOG, CHD8, POU5F1, CDK7, ZNF317, SRF, PAX6, SMARCA4, RAD21, LHX2, GRHL3, GABPA, STAT3, NR3C1, CEBPB, CREB1, IRF1, GATA2, FLI1, MRTFB, RUNX1, POU4F2, SMAD3, SMARCC1, PRDM10, ZNF384, NOTCH1, GATA4, ARNT, NRF1, PRDM9, FOXM1, PBX3, MAFB, FOS, SUPT5H, MED1, MYB, PIAS1, KLF9, USF1, SP1, MAFK, REST, ZBTB7A, SALL4, PHIP, SMC3, FOXA2, MEIS1, SS18, WT1, MAFF, TCF7, CDK9, HOXB13, YY1, RELA, JUNB, AHR, HIF1A, OTX2, GATA3, TAL1, MAX, TCF7L2, AR, ZBTB40, BRD4, CLOCK, MAZ, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 26
- Related genes and loops