- Basic information
- CohesinDB ID: CDBP00413871
- Locus: chr21-17046785-17047135
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Data sourse: GSE206145-NatGen2015
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Cell type: Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
31% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 91%,
"9_Het": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops
- Related gene:
- Related loop:
chr21:15750000-15775000~~chr21:17050000-17075000,
chr21:15950000-15975000~~chr21:17050000-17075000,
chr21:16050000-16075000~~chr21:17050000-17075000,
chr21:16081687-16083628~~chr21:17044535-17046501,
chr21:16081702-16083954~~chr21:17044780-17046167,
chr21:16081934-16083365~~chr21:17044658-17046031,
chr21:16325000-16350000~~chr21:17050000-17075000,
chr21:16329660-16331732~~chr21:17044687-17046393,
chr21:16450000-16475000~~chr21:17025000-17050000,
chr21:16453732-16455413~~chr21:17044535-17046501,
chr21:16453763-16456291~~chr21:17044592-17046378,
chr21:16586568-16589020~~chr21:17044592-17046378,
chr21:16607527-16609497~~chr21:17044740-17046062,
chr21:16650000-16675000~~chr21:17050000-17075000,
chr21:16825000-16850000~~chr21:17050000-17075000,
chr21:16925000-16950000~~chr21:17025000-17050000,
chr21:16941841-16944243~~chr21:17044377-17046499,
chr21:16941877-16944275~~chr21:17044250-17046531,
chr21:16942113-16943826~~chr21:17044681-17046308,
chr21:16950000-16975000~~chr21:17050000-17075000,
chr21:17025000-17050000~~chr21:17125000-17150000,
chr21:17050000-17075000~~chr21:17250000-17275000,
chr21:17050000-17075000~~chr21:17550000-17575000,