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Basic information

CohesinDB ID: CDBP00413887

Locus: chr21-17132317-17133654

Data sourse: ENCSR000BLD, ENCSR000BTU, GSE206145-GSE177045, GSE67783, GSE72082, GSE86191, GSE138405, GSE25021, GSE105028, GSE206145-NatGen2015, ENCSR000ECE, GSE83726, ENCSR703TNG, GSE126990, GSE97394

Cell type: MCF-7, H1-hESC, Fibroblast, HCT-116, Hela-Kyoto, RH4, Ishikawa, HUES64, HSPC, H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 5% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.889

Subunit: SA1,Rad21,SA2

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 31% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 78%, "9_Het": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: POU2F2, CHD8, SMC1A, ZSCAN5D, POU5F1, MYCN, EBF1, KDM4C, ZFX, XBP1, ZBTB48, ZSCAN5A, WT1, RELA, ATF3, RAD21, SP140, HIF1A, PRDM9, ETV6, MED1, NCOA3, TRIM28, EZH2, ESR1, SETDB1, MYOD1, CTCF, SPI1, GSPT2, AR, NOTCH3, BRD4, SCRT1, SMC3, STAG1

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 7

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00413887