Browse_each

Basic information

CohesinDB ID: CDBP00413889

Locus: chr21-17139037-17140142

Data sourse: GSE138405, GSE105028, GSE206145-NatGen2015, ENCSR000BMY, GSE138105

Cell type: Hela-Kyoto, Fibroblast, SLK, GM12878, H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.944

Subunit: Rad21,SA2

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 31% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 74%, "1_TssA": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: ETV1, PRDM1, HIF1A, FOXA1, ELF3, ERG

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 3

Related genes and loops

Related gene:

Tools:

Assay

refGene

Ruler

Cohesin site CDBP00413889

CDBP00413889 regulated genes

Related cohesin loop

Deatailed information for cohesin site CDBP00413889

Current terms

Suggested terms

Custom term