- Basic information
- CohesinDB ID: CDBP00413889
- Locus: chr21-17139037-17140142
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Data sourse: GSE138405, GSE105028, GSE206145-NatGen2015, ENCSR000BMY, GSE138105
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Cell type: Hela-Kyoto, Fibroblast, SLK, GM12878, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
31% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 74%,
"1_TssA": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ETV1, PRDM1, HIF1A, FOXA1, ELF3, ERG
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
- Related loop:
chr21:16075000-16100000~~chr21:17125000-17150000,
chr21:16325000-16350000~~chr21:17125000-17150000,
chr21:16450000-16475000~~chr21:17125000-17150000,
chr21:16625000-16650000~~chr21:17125000-17150000,
chr21:16700000-16725000~~chr21:17125000-17150000,
chr21:16725000-16750000~~chr21:17125000-17150000,
chr21:16825000-16850000~~chr21:17125000-17150000,
chr21:16925000-16950000~~chr21:17125000-17150000,
chr21:16950000-16975000~~chr21:17125000-17150000,
chr21:16975000-17000000~~chr21:17125000-17150000,
chr21:17000000-17025000~~chr21:17125000-17150000,
chr21:17025000-17050000~~chr21:17125000-17150000,
chr21:17125000-17150000~~chr21:17250000-17275000,
chr21:17125000-17150000~~chr21:17300000-17325000,
chr21:17125000-17150000~~chr21:17325000-17350000,
chr21:17125000-17150000~~chr21:17350000-17375000,