Browse_each

Basic information

CohesinDB ID: CDBP00413890

Locus: chr21-17145725-17147370

Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE72082, GSE126634, ENCSR760NPX, ENCSR000BLY, ENCSR404BPV, GSE105028, GSE103477, GSE111537, GSE25021, GSE108869, ENCSR000BUC, ENCSR917QNE, ENCSR000BTU, GSE138405, GSE76893, GSE152721, GSE206145-NatGen2015, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR703TNG, ENCSR199XBQ, GSE106870, GSE116344, GSE138105, GSE145327, ENCSR895JMI, ENCSR000EEG, ENCSR193NSH, ENCSR768DOX, ENCSR000BLS, ENCSR000ECE, ENCSR247LSH, ENCSR807WAC, ENCSR000EHX, ENCSR748MVX, ENCSR767DFK, ENCSR495WGO, ENCSR984DZW, GSE97394, ENCSR217ELF, ENCSR000BTQ, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR054FKH, ENCSR000EDE, GSE126990, GSE50893, ENCSR000ECS

Cell type: RH4, GM2610, SLK, CVB-hiPSC, CVI-hiPSC, Liver, H9-hESC, Fibroblast, Ishikawa, HeLa-S3, H1-hESC, SK-N-SH, HeLa-Tet-On, THP-1, HUES64, MCF-7, Hela-Kyoto, HEK293T, Hep-G2, Neurons-H1, A-549, OCI-AML-3, HAP1

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 21% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.744

Subunit: SA1,Rad21,SMC1,SA2,SMC3

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 31% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 96%, "9_Het": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: AR, RELA, GRHL3, HIF1A, DUX4, FOXA1, ZNF334, GABPA, SUZ12, HOXB13

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 14

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00413890