- Basic information
- CohesinDB ID: CDBP00413894
- Locus: chr21-17231095-17231663
-
Data sourse: ENCSR000BTQ, ENCSR000BTU, ENCSR167MTG, GSE72082, GSE138405, GSE25021, ENCSR000BLY, ENCSR000EDE, ENCSR000EHX, GSE138105, GSE103477, GSE126990, GSE108869
-
Cell type: MCF-7, Hela-Kyoto, Hep-G2, SLK, Ishikawa, HeLa-S3, SK-N-SH, THP-1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.911
- Subunit: SA1,Rad21,SA2
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
31% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 94%,
"9_Het": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: AR, ZNF778, RAD21, ESR1, SRF, SMC3, CTCF, HOXB13, SPI1, HNF4A
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops