- Basic information
- CohesinDB ID: CDBP00413896
- Locus: chr21-17248296-17248781
-
Data sourse: GSE67783, GSE86191
-
Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
31% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 88%,
"9_Het": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene:
- Related loop:
chr21:14325000-14350000~~chr21:17225000-17250000,
chr21:15625000-15650000~~chr21:17250000-17275000,
chr21:15875000-15900000~~chr21:17250000-17275000,
chr21:15900000-15925000~~chr21:17250000-17275000,
chr21:15925000-15950000~~chr21:17250000-17275000,
chr21:16000000-16025000~~chr21:17250000-17275000,
chr21:16075000-16100000~~chr21:17250000-17275000,
chr21:16175000-16200000~~chr21:17250000-17275000,
chr21:16275000-16300000~~chr21:17250000-17275000,
chr21:16300000-16325000~~chr21:17250000-17275000,
chr21:16325000-16350000~~chr21:17250000-17275000,
chr21:16350000-16375000~~chr21:17250000-17275000,
chr21:16400000-16425000~~chr21:17250000-17275000,
chr21:16425000-16450000~~chr21:17250000-17275000,
chr21:16450000-16475000~~chr21:17250000-17275000,
chr21:16625000-16650000~~chr21:17250000-17275000,
chr21:16800000-16825000~~chr21:17250000-17275000,
chr21:16825000-16850000~~chr21:17250000-17275000,
chr21:16850000-16875000~~chr21:17250000-17275000,
chr21:16925000-16950000~~chr21:17250000-17275000,
chr21:16950000-16975000~~chr21:17250000-17275000,
chr21:17050000-17075000~~chr21:17250000-17275000,
chr21:17125000-17150000~~chr21:17250000-17275000,