- Basic information
- CohesinDB ID: CDBP00413900
- Locus: chr21-17266505-17266907
-
Data sourse: GSE206145-GSE177045
-
Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
46% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 97%,
"7_Enh": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: GLIS1, SMARCA2, FOXA2, EZH2phosphoT487, ZSCAN5C, POU5F1, SS18, SIN3A, CTBP1, ZBTB17, WT1, ZBTB48, FOXA1, FOXF1, HOXB13, SMARCC1, ZNF35, MEN1, BRG1, SMARCA4, OSR2, ZBTB44, PRDM1, GATA3, STAT3, MZF1, FOS, TLE3, NR3C1, TEAD1, CEBPD, ZNF217, ESR1, PKNOX1, KLF8, FEZF1, ZNF334, BCL6B, ZNF561, GRHL2, ZNF34, CTCF, NUP98-HOXA9, ZNF843, BCL11A, PHOX2B, BAF155, DPF2, GATA2, ZBTB42, SRSF9, PHIP, CTBP2, CUX1, PRDM6, BRCA1
- Target gene symbol (double-evidenced CRMs): USP25
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000155313,
- Related loop:
chr21:15625000-15650000~~chr21:17250000-17275000,
chr21:15875000-15900000~~chr21:17250000-17275000,
chr21:15900000-15925000~~chr21:17250000-17275000,
chr21:15925000-15950000~~chr21:17250000-17275000,
chr21:16000000-16025000~~chr21:17250000-17275000,
chr21:16075000-16100000~~chr21:17250000-17275000,
chr21:16175000-16200000~~chr21:17250000-17275000,
chr21:16275000-16300000~~chr21:17250000-17275000,
chr21:16300000-16325000~~chr21:17250000-17275000,
chr21:16325000-16350000~~chr21:17250000-17275000,
chr21:16329708-16331761~~chr21:17269501-17271331,
chr21:16329712-16331679~~chr21:17269387-17271333,
chr21:16350000-16375000~~chr21:17250000-17275000,
chr21:16400000-16425000~~chr21:17250000-17275000,
chr21:16418634-16420797~~chr21:17269397-17271405,
chr21:16425000-16450000~~chr21:17250000-17275000,
chr21:16450000-16475000~~chr21:17250000-17275000,
chr21:16453720-16456792~~chr21:17269429-17272265,
chr21:16453732-16455413~~chr21:17269224-17271500,
chr21:16625000-16650000~~chr21:17250000-17275000,
chr21:16800000-16825000~~chr21:17250000-17275000,
chr21:16825000-16850000~~chr21:17250000-17275000,
chr21:16850000-16875000~~chr21:17250000-17275000,
chr21:16925000-16950000~~chr21:17250000-17275000,
chr21:16941849-16943705~~chr21:17269470-17271157,
chr21:16941877-16944275~~chr21:17269322-17271637,
chr21:16941952-16943917~~chr21:17269754-17271411,
chr21:16941967-16943941~~chr21:17269754-17271114,
chr21:16942009-16944052~~chr21:17269224-17271500,
chr21:16942081-16944185~~chr21:17269774-17271092,
chr21:16942093-16943567~~chr21:17269562-17271294,
chr21:16942104-16943784~~chr21:17269500-17271217,
chr21:16942113-16943826~~chr21:17269340-17271431,
chr21:16942114-16943708~~chr21:17269513-17271267,
chr21:16942146-16943536~~chr21:17269758-17271050,
chr21:16942153-16943822~~chr21:17269534-17271190,
chr21:16942165-16943958~~chr21:17269707-17271281,
chr21:16942321-16943668~~chr21:17269397-17271405,
chr21:16942324-16943645~~chr21:17269832-17271058,
chr21:16950000-16975000~~chr21:17250000-17275000,
chr21:17050000-17075000~~chr21:17250000-17275000,
chr21:17125000-17150000~~chr21:17250000-17275000,