- Basic information
- CohesinDB ID: CDBP00413908
- Locus: chr21-17296029-17296474
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Data sourse: ENCSR000BLD, ENCSR000BTU, ENCSR167MTG, GSE72082, GSE86191, GSE116868, GSE111913, ENCSR000BLS, GSE105028, ENCSR054FKH, GSE25021
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Cell type: H1-hESC, HCT-116, Hep-G2, MB157, Ishikawa, RT-112, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
46% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"9_Het": 51%,
"15_Quies": 46%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, TRP47, MYCN, ZFX, ZBTB48, WT1, ZSCAN5A, TET2, TBX3, RELA, ZBTB2, OGG1, ATF3, MYC, BRG1, RAD21, SP140, GRHL3, XRCC5, MAX, TEAD3, GRHL2, SETDB1, GABPB1, CTCF, MXD3, NOTCH3, MAZ, AATF, SMC3, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops