- Basic information
- CohesinDB ID: CDBP00413911
- Locus: chr21-17327483-17328313
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Data sourse: ENCSR000BLD, ENCSR167MTG, GSE67783, GSE86191, GSE111913, GSE105028, GSE206145-NatGen2015, ENCSR054FKH, GSE206145, GSE25021
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Cell type: MCF-7, H1-hESC, RPE, Fibroblast, HCT-116, Hep-G2, RT-112, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
46% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 88%,
"9_Het": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, CBX4, NR3C1, PGR, ASCL1, POU5F1, EZH2, RNF2, ZSCAN16, BRD4, HIF1A, FOXA1, GABPA, CBX8, JUN, HOXB13, SPI1, ERG, YY1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops