- Basic information
- CohesinDB ID: CDBP00413913
- Locus: chr21-17343206-17343404
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Data sourse: ENCSR000BTU, GSE108869, ENCSR000ECS, GSE72082
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Cell type: Ishikawa, HeLa-S3, Hep-G2
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
46% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 89%,
"9_Het": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, CBX5, HMG20A, RXRB, KDM3A, THRB, MXD4, TEAD1, TRIM28, KLF6, RCOR2, BAF155, SOX5, IRF4, TRIM24, RFX5, E2F1, RFX3, TEAD4, FOXA3, ZNF175, GATAD2A, EHMT2, RBPJ, NANOG, POU5F1, CDK7, DUX4, STAT1, GATAD1, SAP130, ERG, MIER1, MYC, TRIP13, SMARCA4, HOMEZ, RAD21, GABPA, ZNF614, NKX3-1, RCOR1, MIER3, NR2F6, NFE2, CREB1, ZNF652, MIXL1, TFE3, HBP1, HDAC2, ZNF644, DRAP1, ZGPAT, NFIL3, NFYB, ATF1, ETV5, THAP11, MAFG, ZBTB24, CEBPA, BCL6, CBX1, SOX13, SMARCC1, RARA, NFYC, NOTCH1, ARNT, ATF2, SMAD4, NFYA, FOS, CDK8, HMGXB4, TGIF2, TEAD3, ZNF264, PIAS1, ZNF3, USF1, ARID2, REST, RBM25, AFF1, SMC3, ZNF394, PPARG, CBX3, CREM, MIER2, ZNF580, KDM1A, YY1, BRG1, HIF1A, MAX, ZNF143, CEBPG, ELF3, PHF5A, KAT8, NFKBIZ, ARID4B, EGLN2, BRD4, DMAP1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops