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Basic information

CohesinDB ID: CDBP00414022

Locus: chr21-17700376-17700656

Data sourse: GSE86191

Cell type: HCT-116

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: TSS,Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 60% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 95%, "14_ReprPCWk": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: NFATC3, POU2F2, ZFX, MTA2, ERG3, ARID3A, TRIM22, RELA, TARDBP, RUNX3, ATF2, BATF, PAX5, IKZF1, NR2F1, ZNF217, ESR1, JUN, BCL11A, NIPBL, TBX21, BHLHE40, DPF2, IRF4, POU2F3, IKZF2, JUND, NFYB, MLLT1

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 3

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00414022