- Basic information
- CohesinDB ID: CDBP00414023
- Locus: chr21-17703471-17703579
-
Data sourse: GSE120943, GSE98367
-
Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
60% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 90%,
"9_Het": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:16375000-16400000~~chr21:17675000-17700000,
chr21:17675000-17700000~~chr21:17775000-17800000,
chr21:17675000-17700000~~chr21:17800000-17825000,
chr21:17675000-17700000~~chr21:17850000-17875000,
chr21:17675000-17700000~~chr21:17875000-17900000,
chr21:17675000-17700000~~chr21:17900000-17925000,
chr21:17675000-17700000~~chr21:17925000-17950000,
chr21:17675000-17700000~~chr21:17975000-18000000,
chr21:17675000-17700000~~chr21:18025000-18050000,
chr21:17675000-17700000~~chr21:18100000-18125000,
chr21:17675000-17700000~~chr21:18200000-18225000,
chr21:17675000-17700000~~chr21:18225000-18250000,
chr21:17675000-17700000~~chr21:18275000-18300000,
chr21:17675000-17700000~~chr21:18350000-18375000,
chr21:17675000-17700000~~chr21:18600000-18625000,
chr21:17675000-17700000~~chr21:20950000-20975000,
chr21:17675000-17700000~~chr21:27500000-27525000,
chr21:17700000-17725000~~chr21:17900000-17925000,
chr21:17700000-17725000~~chr21:29200000-29225000,