- Basic information
- CohesinDB ID: CDBP00414034
- Locus: chr21-17745196-17746089
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Data sourse: GSE206145-GSE177045, GSE143937, GSE67783
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Cell type: K-562, MCF-7, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
60% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 89%,
"9_Het": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, SMAD3, FOXA1, DDX5, CREBBP, ZNF384, GR, ARNT, HIF1A, GRHL3, NKX2-1, GATA3, NFE2, NR3C1, TEAD1, KDM5B, ESR1, GRHL2, NFKB1, TRPS1, AR, EGLN2, HSF1, NCOA2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops