- Basic information
- CohesinDB ID: CDBP00414039
- Locus: chr21-17780265-17781745
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Data sourse: ENCSR000BLD, ENCSR000BTQ, GSE38395, ENCSR000DZP, ENCSR000EAC, GSE72082, GSE93080, GSE206145, ENCSR000ECE, ENCSR000BMY, GSE103477, GSE25021, GSE50893, GSE126755, GSE97394
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Cell type: MCF-7, GM12892, GM2630, H1-hESC, SNYDER, GM2610, GM12878, GM12891, GM2588, GM12890, GM19238, hLCL, GM2255, HUES64, Neutrophil, THP-1, GM18486, B-cell
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 7% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.800
- Subunit: NIPBL,SA1,Rad21,SMC1,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 46%,
"7_Enh": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CBX5, ZNF496, SOX2, FOXA1, ZNF28, TSC22D4, LYL1, BMI1, NFIC, RUNX3, CHD7, CBFB, PAX5, BACH2, JMJD1C, MAF, KLF5, ELF1, TRIM28, BCLAF1, ZNF217, LMO2, USF2, JUN, CTCF, TCF12, EP300, SND1, DPF2, TRIM24, IRF4, RAD51, KMT2B, GTF2F1, RBPJ, EED, POU2F2, POU5F1, TOP2A, RUNX1T1, MTA2, DUX4, STAT1, NBN, ARID3A, ERG, ZNF597, NFKB2, ZNF341, MYC, ETS1, RAD21, BATF3, GABPA, STAT3, IKZF1, NFE2, NR3C1, CEBPB, STAT5B, KMT2A, CREB1, ARHGAP35, SPI1, EHF, GATAD2B, FLI1, SMARCA5, RELB, HEXIM1-CDK9, RUNX1, SMC1A, CEBPA, ERG3, TRIM22, MEF2A, CREBBP, PBX4, ARNT, BACH1, ATF2, HMBOX1, ETV6, FOXM1, PBX3, FOS, SUPT5H, CDK8, MED1, PML, CEBPD, MYB, SMAD1, SETDB1, STAT5A, RBM22, BCL11A, NIPBL, SP1, NR4A1, ATF7, ASH2L, TCF3, STAT2, MLLT1, STAG1, NFATC3, SKI, MEF2B, MTA3, EBF1, CREM, PAF1, NFATC1, ZBED1, GTF2B, MEF2C, TCF7, CDK9, BCL3, KDM1A, YY1, RELA, TARDBP, JUNB, SKIL, GATA3, BATF, TAL1, MAX, CEBPG, NR2F1, ZNF687, PKNOX1, TP53, NFKB1, TBX21, BHLHE40, TAF1, EGR1, IKZF2, BRD4, NOTCH3, ZNF24, AHR
- Target gene symbol (double-evidenced CRMs): USP25
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000155313,
- Related loop:
chr21:14075000-14100000~~chr21:17775000-17800000,
chr21:14375000-14400000~~chr21:17775000-17800000,
chr21:15025000-15050000~~chr21:17775000-17800000,
chr21:15725000-15750000~~chr21:17775000-17800000,
chr21:17350000-17375000~~chr21:17775000-17800000,
chr21:17375000-17400000~~chr21:17775000-17800000,
chr21:17425000-17450000~~chr21:17775000-17800000,
chr21:17650000-17675000~~chr21:17775000-17800000,
chr21:17675000-17700000~~chr21:17775000-17800000,
chr21:17775000-17800000~~chr21:17900000-17925000,
chr21:17775000-17800000~~chr21:18100000-18125000,
chr21:17775000-17800000~~chr21:18875000-18900000,
chr21:17775000-17800000~~chr21:23825000-23850000,
chr21:17775000-17800000~~chr21:25175000-25200000,
chr21:17775000-17800000~~chr21:25450000-25475000,
chr21:17775000-17800000~~chr21:25725000-25750000,
chr21:17775000-17800000~~chr21:29000000-29025000,
chr21:17775000-17800000~~chr21:38225000-38250000,