- Basic information
- CohesinDB ID: CDBP00414056
- Locus: chr21-17828197-17828666
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Data sourse: GSE206145, GSE206145-NatGen2015, ENCSR230ZWH
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Cell type: RPE, Liver, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 78%,
"7_Enh": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXA2, CEBPA, FOXA1, SRF, SMARCC1, YY1, ZNF384, ONECUT1, PBX4, RXRA, TAL1, STAT3, NR3C1, CEBPB, CCAR2, MYOD1, SP1, BCL11A, HNF4A, BRD4, ZNF766, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops