- Basic information
- CohesinDB ID: CDBP00414057
- Locus: chr21-17829411-17829876
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Data sourse: ENCSR000EFJ, GSE206145-NatGen2015, GSE206145, GSE165895
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Cell type: RPE, Fibroblast, IMR-90, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Mau2,Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 80%,
"7_Enh": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, POU2F2, BRD3, GTF2B, SNAPC4, RELA, RUNX2, MYC, CDK6, CHD7, ARNT, PBX4, HIF1A, DAXX, GRHL3, HMGB2, ZNF519, STAT3, MAX, FOS, CDK8, ARNTL, NR3C1, CEBPB, TRIM28, EZH2, OCA2, SETDB1, USF2, CTCF, EP300, BCL11A, BRD4
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops