- Basic information
- CohesinDB ID: CDBP00414059
- Locus: chr21-17848091-17849698
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Data sourse: ENCSR000EFJ, GSE38395, GSE93080, ENCSR000EAC, ENCSR000DZP, GSE138405, ENCSR000HPG, ENCSR000BLY, GSE38411, GSE206145, GSE206145-NatGen2015, ENCSR000BMY, GSE68388, GSE111537, GSE126990, GSE50893, GSE165895
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Cell type: RPE, GM12892, GM2630, Fibroblast, Hela-Kyoto, GM2610, GM12878, GM12891, GM2588, GM12890, hLCL, IMR-90, SK-N-SH, BCBL-1, OCI-AML-3, HuCC-T1, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 9% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.811
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 65%,
"7_Enh": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, FOSL1, PGR, CBX5, SOX2, MEIS2, FOXA1, SUZ12, PBX2, MLL4, TFAP4, BMI1, NFIC, ATF3, RUNX3, CHD7, CBFB, PAX5, MITF, ZNF320, ZNF736, ELF1, BCLAF1, TEAD1, ETV1, TRIM28, ZNF217, ESR1, USF2, CTCF, JUN, TCF12, EP300, DPF2, PAX8, IRF4, TRIM24, ZNF407, RAD51, E2F1, TEAD4, RBPJ, EED, TFAP2C, POU2F2, BRD3, MYCN, CDK7, POU5F1, CTBP1, MTA2, DUX4, SRF, NBN, ARID3A, HOXC5, PAX6, OGG1, NFKB2, MYC, SMARCA4, RAD21, GRHL3, RXRA, NKX2-1, PROX1, BATF3, GABPA, STAT3, IKZF1, RCOR1, NFE2, VDR, ARNTL, NR3C1, CEBPB, CREB1, ZHX2, SPI1, ZNF257, INTS13, GATA2, GATAD2B, FLI1, MXI1, NR2C2, SMARCA5, RELB, MRTFB, RUNX1, SMC1A, HDAC1, SIN3A, ZFX, SMAD3, TRIM22, SMARCC1, MEF2A, ZBTB2, RUNX2, PBX4, ARNT, DAXX, NRF1, ATF2, ETV6, FOXM1, PBX3, FOS, CDK8, CHD1, MED1, ZEB1, PML, TERF1, MYB, ZMYM3, KLF9, SETDB1, STAT5A, MAFK, SP1, BCL11A, NIPBL, HNF4A, USF1, ARID2, REST, ATF7, ASH2L, PHIP, TCF3, MLLT1, NFATC3, MEF2B, MTA3, CREM, EBF1, NFATC1, SS18, GTF2B, ZBED1, MEF2C, TCF7, ZBTB33, CDK9, BCL3, YY1, RELA, TARDBP, JUNB, ZFP36, SKIL, HIF1A, GATA3, BATF, TAL1, MAX, GATA1, KLF4, NR2F1, TCF7L2, TP53, PKNOX1, ZNF687, NFKB1, MYOD1, BRD2, ELF3, TBX21, BHLHE40, AR, TAF1, ZBTB40, IKZF2, JUND, BRD4, MAZ, ZNF24, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops