- Basic information
- CohesinDB ID: CDBP00414062
- Locus: chr21-17861964-17862275
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Data sourse: ENCSR000BLD, GSE97394, ENCSR000ECE, GSE105028
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Cell type: H1-hESC, HUES64, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 90%,
"14_ReprPCWk": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF283, MEF2B, FOXA2, POU5F1, TOP2A, SOX2, ID3, DUX4, FOXA1, RELA, ZBTB2, MYC, SMARCA4, RAD21, PRDM1, GRHL3, NKX2-1, BATF, STAT3, FOS, KLF4, ZFP69B, SP7, CEBPD, CREB1, TCF7L2, EZH2, ESR1, SETDB1, CTCF, SIX2, JUND, PRDM6
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops