- Basic information
- CohesinDB ID: CDBP00414071
- Locus: chr21-17929593-17930350
-
Data sourse: GSE67783, GSE86191
-
Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 73%,
"7_Enh": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: ZNF660, SOX2, FOXA1, PBX2, ATF3, CHD7, ZNF189, SFPQ, TRIM28, BCLAF1, SNAI2, LMO2, ESR1, OCA2, SMAD5, CTCF, TCF12, PAX8, IRF4, SMC1, TEAD4, GTF2F1, TFAP2C, RBPJ, POU2F2, CHD8, NANOG, MYCN, POU5F1, ZNF263, KDM4C, CDK7, ZBTB48, DUX4, STAT1, SRF, ERG, MYC, RAD21, GRHL3, GABPA, XRCC5, EZH2, GABPB1, SPI1, GATA2, GATAD2B, HCFC1, SMARCA5, RELB, MRTFB, RUNX1, SMC1A, CBX1, NKX2-2, ZFX, POU4F2, TET2, ERG3, TRIM22, ZBTB2, PBX3, SP2, ZEB1, MYB, PIAS1, SETDB1, BCL11A, GSPT2, SMC3, MLLT1, STAG1, GTF2B, WT1, ZNF574, CDK9, YY1, RELA, TARDBP, SP140, HIF1A, OTX2, MAX, SPIB, ZNF143, HAND2, NCOA3, TCF7L2, TP53, PKNOX1, NFKB1, BRD2, AR, EGLN2, HEXIM1, RB1, HSF1, NOTCH3, BRD4, MAZ, TBX2
- Target gene symbol (double-evidenced CRMs): TMPRSS15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 16
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000154646,
- Related loop:
chr21:17350000-17375000~~chr21:17900000-17925000,
chr21:17385938-17388768~~chr21:17924257-17926724,
chr21:17386482-17388045~~chr21:17924411-17926774,
chr21:17600000-17625000~~chr21:17900000-17925000,
chr21:17650000-17675000~~chr21:17900000-17925000,
chr21:17675000-17700000~~chr21:17900000-17925000,
chr21:17675000-17700000~~chr21:17925000-17950000,
chr21:17677615-17680352~~chr21:17923881-17926128,
chr21:17677812-17680265~~chr21:17924313-17926645,
chr21:17677823-17680312~~chr21:17924291-17927223,
chr21:17677849-17680474~~chr21:17924257-17926724,
chr21:17677927-17680289~~chr21:17924240-17926680,
chr21:17678060-17680287~~chr21:17924279-17927173,
chr21:17678109-17680458~~chr21:17924273-17926731,
chr21:17678127-17680159~~chr21:17924472-17926784,
chr21:17678134-17680490~~chr21:17924283-17926719,
chr21:17678148-17680221~~chr21:17924397-17926788,
chr21:17678183-17680160~~chr21:17924495-17926797,
chr21:17678201-17680185~~chr21:17924411-17926774,
chr21:17678230-17680476~~chr21:17924284-17926668,
chr21:17678232-17680291~~chr21:17924273-17926705,
chr21:17678243-17680235~~chr21:17924376-17926721,
chr21:17678249-17680466~~chr21:17924313-17926669,
chr21:17678253-17680475~~chr21:17924113-17926084,
chr21:17678257-17680250~~chr21:17924370-17926081,
chr21:17678261-17680309~~chr21:17924244-17926698,
chr21:17678268-17680024~~chr21:17924382-17926045,
chr21:17678273-17680232~~chr21:17924311-17926659,
chr21:17678274-17680496~~chr21:17924317-17926677,
chr21:17678275-17679993~~chr21:17924375-17926695,
chr21:17678276-17680252~~chr21:17924115-17926703,
chr21:17678299-17680259~~chr21:17924330-17926663,
chr21:17678306-17680047~~chr21:17924232-17925966,
chr21:17678316-17680058~~chr21:17924329-17925933,
chr21:17678318-17680109~~chr21:17924273-17926069,
chr21:17678321-17680260~~chr21:17924254-17926747,
chr21:17678321-17680290~~chr21:17924188-17926114,
chr21:17678360-17680330~~chr21:17924174-17926108,
chr21:17678406-17680047~~chr21:17924235-17926067,
chr21:17678407-17680331~~chr21:17924341-17926046,
chr21:17678440-17680173~~chr21:17924485-17926802,
chr21:17678442-17679985~~chr21:17924612-17926635,
chr21:17678447-17680004~~chr21:17924354-17926683,
chr21:17678473-17680046~~chr21:17924396-17926719,
chr21:17678516-17679996~~chr21:17924566-17926674,
chr21:17688092-17690151~~chr21:17924113-17926084,
chr21:17688212-17690371~~chr21:17924273-17926731,
chr21:17688304-17689964~~chr21:17924311-17926659,
chr21:17700000-17725000~~chr21:17900000-17925000,
chr21:17725000-17750000~~chr21:17900000-17925000,
chr21:17750000-17775000~~chr21:17900000-17925000,
chr21:17775000-17800000~~chr21:17900000-17925000,
chr21:17800000-17825000~~chr21:17900000-17925000,
chr21:17924283-17926719~~chr21:18368377-18371085,
chr21:17924291-17927223~~chr21:18368401-18369908,
chr21:17925000-17950000~~chr21:18025000-18050000,
chr21:17925000-17950000~~chr21:18200000-18225000,
chr21:17925000-17950000~~chr21:18250000-18275000,
chr21:17925000-17950000~~chr21:18275000-18300000,
chr21:17925000-17950000~~chr21:18350000-18375000,
chr21:17925000-17950000~~chr21:18475000-18500000,
chr21:17925000-17950000~~chr21:20875000-20900000,
chr21:17925000-17950000~~chr21:20950000-20975000,