- Basic information
- CohesinDB ID: CDBP00414083
- Locus: chr21-18023206-18023542
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
31% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 79%,
"7_Enh": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, CHD8, MYCN, CRY1, SOX2, ZFX, XBP1, ZBTB48, DUX4, STAT1, FOXA1, ERG3, RELA, NEUROD1, CHD7, OTX2, TAL1, EZH2, TP53, SETDB1, CTCF, T, NOTCH3, CLOCK, FOXP1, STAG1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 8
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:17650000-17675000~~chr21:18000000-18025000,
chr21:17675000-17700000~~chr21:18025000-18050000,
chr21:17825000-17850000~~chr21:18000000-18025000,
chr21:17925000-17950000~~chr21:18025000-18050000,
chr21:18000000-18025000~~chr21:18225000-18250000,
chr21:18000000-18025000~~chr21:18500000-18525000,
chr21:18000000-18025000~~chr21:20800000-20825000,
chr21:18025000-18050000~~chr21:18175000-18200000,
chr21:18025000-18050000~~chr21:18200000-18225000,
chr21:18025000-18050000~~chr21:18225000-18250000,
chr21:18025000-18050000~~chr21:18250000-18275000,
chr21:18025000-18050000~~chr21:18350000-18375000,