- Basic information
- CohesinDB ID: CDBP00414105
- Locus: chr21-18204849-18205448
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Data sourse: ENCSR000BLD, ENCSR230ZWH, GSE72082, ENCSR000BLY, GSE105028, GSE103477, GSE111537, GSE131606, GSE25021, ENCSR917QNE, ENCSR000BTU, GSE143937, GSE115250, GSE101921, GSE152721, GSE138105, ENCSR703TNG, GSE106870, GSE116344, GSE145327, GSE94872, ENCSR000BLS, ENCSR000EHW, GSE85526, ENCSR000ECE, GSE206145, ENCSR000EHX, GSE97394, ENCSR000BTQ, GSE68388, GSE50893
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Cell type: RH4, SLK, CVB-hiPSC, Liver, TC-32, HuCC-T1, H9-hESC, RPE, HEKn, Ishikawa, K-562, DKO, H1-hESC, SNYDER, SK-N-SH, THP-1, HUES64, MCF-7, MCF-10A, Hep-G2, HUVEC, OCI-AML-3, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 14% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.744
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
31% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 98%,
"9_Het": 1%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF334, ERG
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 20
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:17675000-17700000~~chr21:18200000-18225000,
chr21:17850000-17875000~~chr21:18200000-18225000,
chr21:17875000-17900000~~chr21:18200000-18225000,
chr21:17925000-17950000~~chr21:18200000-18225000,
chr21:18025000-18050000~~chr21:18175000-18200000,
chr21:18025000-18050000~~chr21:18200000-18225000,
chr21:18040096-18042223~~chr21:18204238-18205925,
chr21:18040385-18042120~~chr21:18204504-18205995,
chr21:18040504-18041951~~chr21:18204494-18205803,
chr21:18040579-18041906~~chr21:18204448-18205978,
chr21:18175000-18200000~~chr21:18500000-18525000,