- Basic information
- CohesinDB ID: CDBP00414109
- Locus: chr21-18248692-18249015
-
Data sourse: GSE138405, GSE62063
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Cell type: Hela-Kyoto, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: NIPBL,SMC3
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
31% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 72%,
"14_ReprPCWk": 25%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): TMPRSS15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 12
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000154646,
- Related loop:
chr21:17350000-17375000~~chr21:18250000-18275000,
chr21:17650000-17675000~~chr21:18225000-18250000,
chr21:17650000-17675000~~chr21:18250000-18275000,
chr21:17675000-17700000~~chr21:18225000-18250000,
chr21:17825000-17850000~~chr21:18225000-18250000,
chr21:17850000-17875000~~chr21:18225000-18250000,
chr21:17925000-17950000~~chr21:18250000-18275000,
chr21:18000000-18025000~~chr21:18225000-18250000,
chr21:18025000-18050000~~chr21:18225000-18250000,
chr21:18025000-18050000~~chr21:18250000-18275000,
chr21:18050000-18075000~~chr21:18225000-18250000,
chr21:18100000-18125000~~chr21:18250000-18275000,
chr21:18225000-18250000~~chr21:18325000-18350000,
chr21:18225000-18250000~~chr21:18500000-18525000,
chr21:18250000-18275000~~chr21:25300000-25325000,