Browse_each

Basic information

CohesinDB ID: CDBP00414110

Locus: chr21-18249657-18250255

Data sourse: ENCSR000BLD, GSE72082, GSE126634, ENCSR000BLY, GSE105028, GSE111537, GSE25021, GSE108869, ENCSR000BTU, GSE143937, GSE115250, GSE138405, GSE152721, GSE145327, ENCSR000EEG, ENCSR000BLS, ENCSR000ECE, GSE97394, ENCSR000BTQ, ENCSR167MTG, ENCSR000EDE, GSE126990, GSE50893

Cell type: MCF-7, H1-hESC, Hela-Kyoto, Hep-G2, Ishikawa, GM2588, HeLa-S3, HUES64, SK-N-SH, K-562, TC-32, OCI-AML-3, HAP1, H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 7% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.844

Subunit: SA1,Rad21,SA2,SMC1

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 30% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 80%, "14_ReprPCWk": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: NKX2-2, POU5F1, SRF, CDK9, ERG, RELA, ZBTB2, NEUROD1, ONECUT1, MYC, SMARCA4, RAD21, HIF1A, OTX2, GABPA, STAT3, MAX, MED1, ARNTL, BCL11B, ZEB1, ESR1, SETDB1, CTCF, AR, IRF4, BRD4, TCF3, SMC1, SMC3, STAG1

Target gene symbol (double-evidenced CRMs): TMPRSS15

Function elements

Human SNPs: .

Number of somatic mutations (coding): 30

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000154646,

eachgene

Deatailed information for cohesin site CDBP00414110