- Basic information
- CohesinDB ID: CDBP00414127
- Locus: chr21-18350167-18350699
-
Data sourse: GSE206145, GSE206145-NatGen2015
-
Cell type: RPE, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
28% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 89%,
"7_Enh": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: PPARG, FOXA2, SOX2, POU4F2, JUNB, SMARCA4, CHD7, PBX4, DAXX, OTX2, STAT3, PAX5, FOS, MED1, NR3C1, CEBPB, NR2F2, MYB, EZH2, JUN, NUP98-HOXA9, NR4A1, AR, PAX8, GATA2, EGLN2, BRD4
- Target gene symbol (double-evidenced CRMs): TMPRSS15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops