- Basic information
- CohesinDB ID: CDBP00414143
- Locus: chr21-18424120-18424529
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Data sourse: GSE111537, GSE206145-NatGen2015, ENCSR404BPV
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Cell type: Neurons-H1, Fibroblast, OCI-AML-3
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,SMC3,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
28% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 83%,
"7_Enh": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PPARG, FOXA2, NKX2-2, CEBPA, JUNB, MYC, GABPA, STAT3, MAX, MAFB, FOS, CDK8, MED1, CEBPB, MYB, ZNF334, JUN, MAFK, EP300, TRIM24, BRD4, PDX1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops